PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40757.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21691.6 Da    PI: 7.0431
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.5e-121864349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                i+ k   qvtfsk r  ++K A E ++L ++e+a+i++s+  k++ +
  PHT40757.1 18 IDVKNHLQVTFSKCRSSLFKTATEQCTLYGVEIAIIVYSPARKVFSF 64
                6777888**********************************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MAKKPSSMGH QKIKISKIDV KNHLQVTFSK CRSSLFKTAT EQCTLYGVEI AIIVYSPARK  60
VFSFGHRNVE SLIDSLQLTQ ILGEVEIEKK RGESLDQMRK TSQSQCWWEA PISQLDFQEL  120
EQLKDSMDIL KNYVTNQANK FMVNEIANSS TFFGDNGNGI FDNYDIKPDR TMPSSNDLHN  180
HSLGFDSAAL F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-38M-type_MADS family protein