PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40841.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 147aa    MW: 16633.9 Da    PI: 4.8841
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.1e-19957149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                krie+k +r++tf+kRr+g++KKA+EL   Cda++avi fs  g+++ +
  PHT40841.1  9 KRIEDKAKRHTTFTKRRQGLFKKAKELVKRCDAQAAVITFSLAGNIFAF 57
                79****************************************9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KAKELVKRCD AQAAVITFSL AGNIFAFGHP  60
SVDSVVNRYT AAPEQDEEAE KKGEDGVVDE ETKEDEETGM FEVPVKDMDM EELEKLNVAM  120
EEMKKKVVDR INGIVSSSKN EEDLGLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-22M-type_MADS family protein