PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40842.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 296aa    MW: 33327 Da    PI: 9.7069
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1356100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       PHT40842.1  56 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 100
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MVSVYPTLPG QDFQYMGDPM KTGLRGLHPV QSGTGLVMPD DPNKKTRKPY TITKSRESWT  60
EQEHDKFLEA LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKSGTS EHLPPPRPKR  120
KAAHPYPQKA PKKVMSQVGS IQFQPPGALP EPGFGIGPDP LSVPGNAINF SPWTYDNVPA  180
ISTTQMRKDD AQLTSGGVMQ NCSSSSNESM PRNRKTLEAN EQKESQKQMK VMPDFAEVYS  240
FIGSVFDPST RDHLERLKKM DPIDIQTALM LMKNLSFNLS SPECEDHRRL LSSYGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.23e-84MYB_related family protein