PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40849.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 413aa MW: 45604.5 Da PI: 7.2369

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	4.8e-31	229	287	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+ PHT40849.1 229 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 287 79**********************9988**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MLLLRSLSIS LPQKKSAPCF VLFFSLSLCS SSLSLSPKKV NMEEDWDLHA VVRGCTASST 60 TTTTSTTTTA TSCCSFQPRQ DGNFFSFQDP FVPRFDNPTS DFEELHNLYK PFFPKSQVQP 120 QQQVPRSPQN NIIPISPLSV LGGLQDLSAP QPTLKQQQQQ QQQQQHIHQL FNSTRLTQPK 180 QSLSVNGSTN STITASSSHG VSHTQSPRPK RRKNQLKKVC QVPAEGLSSD MWSWRKYGQK 240 PIKGSPYPRG YYRCSTSKGC LARKQVERNR SDPNMFIVTY TAEHNHPMPT HRNSLAGSTR 300 QKPANSEAGT TASDSNKPTS SSPVSSPACH STATEKQESS REEKEDIFED EDEEFGSSNM 360 GLDNMEPADD DFFEGLDELA AQATGDCFSD NFQGSMQLPW LSNNATTTAA GGV

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MLLLRSLSIS LPQKKSAPCF VLFFSLSLCS SSLSLSPKKV NMEEDWDLHA VVRGCTASST  60
TTTTSTTTTA TSCCSFQPRQ DGNFFSFQDP FVPRFDNPTS DFEELHNLYK PFFPKSQVQP  120
QQQVPRSPQN NIIPISPLSV LGGLQDLSAP QPTLKQQQQQ QQQQQHIHQL FNSTRLTQPK  180
QSLSVNGSTN STITASSSHG VSHTQSPRPK RRKNQLKKVC QVPAEGLSSD MWSWRKYGQK  240
PIKGSPYPRG YYRCSTSKGC LARKQVERNR SDPNMFIVTY TAEHNHPMPT HRNSLAGSTR  300
QKPANSEAGT TASDSNKPTS SSPVSSPACH STATEKQESS REEKEDIFED EDEEFGSSNM  360
GLDNMEPADD DFFEGLDELA AQATGDCFSD NFQGSMQLPW LSNNATTTAA GGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	2e-66	WRKY family protein