PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40933.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 794aa    MW: 89457.4 Da    PI: 6.875
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23223323198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF +  + ++el
  PHT40933.1 223 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLR--DGNGEL 317
                 99**************************999543..445568************************************************5..468888 PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +v+v+r
  PHT40933.1 318 RVGVRR 323
                 ***998 PP
2Auxin_resp101.41.2e-33349428183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F+v ++k+++a+++ +svGmRf+m+fe+eds+err++Gt+vg+ d+++ +W++SkWrsLk
  PHT40933.1 349 ASHAITTNTRFVVYYKPRT--SQFIVGLNKYLEAVSHGFSVGMRFRMRFEGEDSPERRFTGTIVGTGDISS-QWSESKWRSLK 428
                 789***************6..9**********************************************777.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    
MAELLALKHG LITARANNFH RISIETDSTA LILMLEKDHP SYHNILTECR SLMEEMHIPV  60
LRRIYREHNA VADALMKEDA RLKHLDLQHY WQMPHFVPTF LQVDREGVCF NRMGSEDLYT  120
ELWKACAGPL VDVPRNGERV YYFPQGHIEQ LEASTNQAVN KQIPQFNLSS KILCRVVHIQ  180
LLAEADTDEV YAQITLHPEA EQEEPSKPDP CLPDLPKRTV HSFCKILTAS DTSTHGGFSV  240
LRKHANECLP QLDMTQATPT QDLVAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR  300
LVAGDAFVFL RDGNGELRVG VRRLARQQSP MPQSVISSQS MHLGVLATAS HAITTNTRFV  360
VYYKPRTSQF IVGLNKYLEA VSHGFSVGMR FRMRFEGEDS PERRFTGTIV GTGDISSQWS  420
ESKWRSLKIH WDEPASMVRP DRVSPWEIEP FVAPTSVDVA QPGIKSKRPR PLDLPRTEIA  480
VASASSPFWY PGSGPTLEVS HLGSITEVQS HDNQLFWSSK QNSSLSNGVS NTSCRTHISG  540
AWQHSILENG SLNLLRDSIE DNKQLITRSA LLDYGSPMSS RASNGLLHDL VDRGNKREIS  600
SSCRLFGIDL RNSNNTPTKA KEILGPNVAS SSADQAPMVP DKSDVDKDQC VEHLNHSDEK  660
EQVPLEALPK DTHKQGLTSS RTRTKVQMHG VRVGRAVDLT ALSGYDNLIS ELEKIFDIKG  720
ELCPRNKWEV VYTDDEGDMM LVGDDPWPEF CNMVRRIFIY SSEEVKKMTP RCKLPILSVE  780
GEATMPSVDS EVKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467471KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein