PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41155.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 377aa MW: 41701.3 Da PI: 6.9297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.9e-06	153	174	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C Cgk F+r nL+ H+r H PHT41155.1 153 FCDFCGKGFKRDANLRMHMRAH 174 6*******************99 PP
2	zf-C2H2	11.8	0.00075	270	286	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ PHT41155.1 270 SCGTSFSRKDKLFGHMA 286 5**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MSFPGNLRHT PANTDRPLFA APMIGDDPLL NLSAVQARMD SLQKFLSDSV NSNTLLGQHH 60 MNMVSDEITS AIHQIIVNGA SLLSSNQLPP PPPPSQELKI NPKSNHPEFD RRDIEDKVVS 120 DSKVEVLDEG EGGSDWETIE LDAVELLAEH IHFCDFCGKG FKRDANLRMH MRAHGNQYKT 180 AEALSKPEKC RESSSNKRRR FSCPFVGCAR NKTHCKFRPL KSVICVKNHF KRSHCPKMYS 240 CTRCNKKNFS VLADLKSHLK HCGETKWKCS CGTSFSRKDK LFGHMALFEG HMPAVVGEMA 300 VAAALENGEE VGTDIFGGPG NGLLDVRTGS DNGFLDRLML DGFESIDSYC FQDLLGSSSP 360 NGLNTVEDTL LDGSINF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MSFPGNLRHT PANTDRPLFA APMIGDDPLL NLSAVQARMD SLQKFLSDSV NSNTLLGQHH  60
MNMVSDEITS AIHQIIVNGA SLLSSNQLPP PPPPSQELKI NPKSNHPEFD RRDIEDKVVS  120
DSKVEVLDEG EGGSDWETIE LDAVELLAEH IHFCDFCGKG FKRDANLRMH MRAHGNQYKT  180
AEALSKPEKC RESSSNKRRR FSCPFVGCAR NKTHCKFRPL KSVICVKNHF KRSHCPKMYS  240
CTRCNKKNFS VLADLKSHLK HCGETKWKCS CGTSFSRKDK LFGHMALFEG HMPAVVGEMA  300
VAAALENGEE VGTDIFGGPG NGLLDVRTGS DNGFLDRLML DGFESIDSYC FQDLLGSSSP  360
NGLNTVEDTL LDGSINF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	1e-77	C2H2 family protein