PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41210.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 250aa    MW: 27064 Da    PI: 6.8392
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41210.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.94.6e-40411411100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+aelal++
  PHT41210.1  41 PCGACKFLRRKCINGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRQDAVVTVTYEAQARLSDPVYGCVSTILALQQQVASLQAELALVQ 139
                 7***********************9989*********************************************************************99 PP

      DUF260  99 ee 100
                 ++
  PHT41210.1 140 TQ 141
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MDEPPSDGAS DQNRRIRCLG KRAAGAMEPQ GSGALPASTA PCGACKFLRR KCINGCVFAP  60
YFGSDQGAAR FAAVHKVFGA SNVSKLLLHI PANRRQDAVV TVTYEAQARL SDPVYGCVST  120
ILALQQQVAS LQAELALVQT QVMNSRYAVA NAFQYSQQQQ QEQHVAILQP SYSNNSSVSN  180
NIKLINNING ASNFNNSTSS TAFDHQLHGS ADTCTANNSP SFDPIHQLHD EEEEESHNPL  240
AFTNHMFHSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-54LBD family protein