PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41229.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19094.7 Da    PI: 10.3673
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.11.7e-162875249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i  ++ r  tfskRr+g++KKA+EL  +++ +va i++ss+gk y++
  PHT41229.1 28 KITKQTSRMATFSKRRKGLFKKAKELESMTGSRVASIVISSSGKPYTW 75
                688999*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MENLLVEEEE KKKLRRMGTG KKKIEIQKIT KQTSRMATFS KRRKGLFKKA KELESMTGSR  60
VASIVISSSG KPYTWGDVNS VIQMHFSGNS SSRCTEPSTS GLNSHHSNSE DVVVASGNSS  120
GRRSGLRHWV ESIDVEGCQN LNQLLMLKQQ LEGTREKIAS IEDSASFQAL FA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11251KKLRRMGTGKKKIEIQKITKQTSRMATFSKRRKGLFKKAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-10M-type_MADS family protein