PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41232.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18665.9 Da    PI: 10.4407
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.37.1e-121258248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                +i  ++ r vtfskRr+g++KK +E   +++ ++a ++fs+ gk y+
  PHT41232.1 12 KITKETSRMVTFSKRRKGLFKKVKEHESMTGCRIASVVFSPIGKPYT 58
                588899***********************************999776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MGTGKKKIEI QKITKETSRM VTFSKRRKGL FKKVKEHESM TGCRIASVVF SPIGKPYTCG  60
DVEYAIQRHF SSNNNNNNSR STEPSTSGLN SRHSNSDDVA VASGDSSGSR SSSSSTPRRK  120
GLHDWVESTD VERCGNLNRL LMWKKQLEGT RKQIASIEDS ESFQALFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-09M-type_MADS family protein