PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41233.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18585 Da    PI: 10.7121
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94.1e-161258248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                +i  ++ r vtfskRr+g++KKA+EL  +++ ++a ++fs+tgk y+
  PHT41233.1 12 KITKETSRMVTFSKRRKGLFKKAKELESMTGCRIASVVFSPTGKPYT 58
                588899*************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MGTGKKKIEI QKITKETSRM VTFSKRRKGL FKKAKELESM TGCRIASVVF SPTGKPYTCG  60
DVEYAIQRHF SGTNNNNSRF TEPSTSGLNS RHSNSDNVAV ASRDSSGSRS SSSSTPRRKG  120
LHDWVEGIDV ERCGNLNRLL MWKKQLEGTR KKIASIEDSE SFQALFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-12M-type_MADS family protein