PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41235.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17792.3 Da    PI: 5.3638
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65.2e-161259249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i   + r vtfskRr g++KK + L  L+d +v  ++fs+tgkly+y
  PHT41235.1 12 KITKPTYRMVTFSKRRMGLFKKSQKLESLTDSRVVSVVFSPTGKLYTY 59
                6777899****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MGTGKKKIEI KKITKPTYRM VTFSKRRMGL FKKSQKLESL TDSRVVSVVF SPTGKLYTYG  60
DVDYAIEKYF SGNSSTSAAV PSIPVLDYMD YYSCSEVPST SSLMTPRRDG FRDWVDSIDV  120
DECENLNRLL MLKEQLEGSI EKIVSNEDSE SFEALFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-13MIKC_MADS family protein