PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41301.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 403aa MW: 44468.8 Da PI: 9.1339

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PHT41301.1 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	12.5	0.00045	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PHT41301.1 148 WKCDKCSKKYAVQSDWKAHSKTC 170 58*****************9998 PP
3	zf-C2H2	10.8	0.0016	178	196	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++++H + PHT41301.1 178 DCGTIFSRRDSFVTHRAFC 196 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MSNLSYGNSS TEEADEIPNV LSSTTSDGSS VHQEQPLPSP NKRRRKLPGN PDPSAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTSNHEIKK RVYICPESSC 120 VHHDPARALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKTC GTKEYKCDCG 180 TIFSRRDSFV THRAFCDALA EENNKVNQVL ASTTQPAATS TGSTQLGPEL ISNTSMLNLL 240 QISNPNIKVP PTSLSNMAGS MFSSSSGYSQ LGTNSSNMSS ATALLQQAAQ MGATVSSNMN 300 SSINVARKSY RSPFNGMQIP IISDHDQIQP QIGNTSVHGF AGSMLQNSSN NDSLTLDFLG 360 IGGMRQRNLH EIIQQQQQQE MSFEQQKQVG QQSIQGMNSM WDD

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MSNLSYGNSS TEEADEIPNV LSSTTSDGSS VHQEQPLPSP NKRRRKLPGN PDPSAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTSNHEIKK RVYICPESSC  120
VHHDPARALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKTC GTKEYKCDCG  180
TIFSRRDSFV THRAFCDALA EENNKVNQVL ASTTQPAATS TGSTQLGPEL ISNTSMLNLL  240
QISNPNIKVP PTSLSNMAGS MFSSSSGYSQ LGTNSSNMSS ATALLQQAAQ MGATVSSNMN  300
SSINVARKSY RSPFNGMQIP IISDHDQIQP QIGNTSVHGF AGSMLQNSSN NDSLTLDFLG  360
IGGMRQRNLH EIIQQQQQQE MSFEQQKQVG QQSIQGMNSM WDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein