PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41413.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 129aa    MW: 14635.4 Da    PI: 8.4627
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-105880527
                --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                 C++f rtG+C+yGd+Ck+ H++
  PHT41413.1 58 VCHHFVRTGYCQYGDSCKYYHPK 80
                6********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MPLGKYYCDY CDKEFQDTAA ARRRHLEGVQ HKRAKALWYD SLRNPQLFND PDSFGKGVCH  60
HFVRTGYCQY GDSCKYYHPK QNSQTVNQTG IPPGDIFREK AGASLGNLPP SLRPPPEGGY  120
PPLPFVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-30C3H family protein