PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41444.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 259aa    MW: 29459.4 Da    PI: 7.567
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.6e-181051243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ 
  PHT41444.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51
                89**************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDNSPEVWPN  60
TMGAQRVLAE FKRMPEMEQS KKMMNQESFL RQRIAKANEQ LKKQSKENRE KEMTEIMYQG  120
LTGKGLQHLN LGDLNDLGWV IDQNLKEIYK RIEAVKKGAS TSSSAAAAKS HAVVAPPVEQ  180
EPAVVELGLD GMQRTQAEWV TDWMNSNTSD QQIGAEWFTD WMNSNTSDQQ IDFGHGDEMI  240
LPNYNDNHSA NMWPNDFYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-66M-type_MADS family protein