PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41452.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 419aa MW: 47158.9 Da PI: 7.2584

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl PHT41452.1 14 KGLWSPEEDEKLMKHITKFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.3	4.3e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+ PHT41452.1 67 RGTFSQDEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLMKHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQRG 120 IDPNTHKPLS EVESEEKASA NSNNKNNDKV SESSNNEFNF VEAHENGFST EKGINNMERY 180 PLIDHQANNI APPTHEFFTA NCKSPDLSSY LSFHNYSPNT NILFNTKNSS ADNMVSDHHQ 240 FNCSTLPNAT FSTMSSNSIL STSPLARTFN INKFQNWEAC TISSNGSNNS NGSSNSIELQ 300 SNCSFFDNSN AAAAAAFTWG SASAAADGSG KQEREEIKWS EYMQTPFSLG VNNNTIQNHH 360 HEISPHHQDL YDGETKSETQ FMTHGTWLQN QTPQTSLQTA DLYSNNNFQR LPAVFGQFS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLMKHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVESEEKASA NSNNKNNDKV SESSNNEFNF VEAHENGFST EKGINNMERY  180
PLIDHQANNI APPTHEFFTA NCKSPDLSSY LSFHNYSPNT NILFNTKNSS ADNMVSDHHQ  240
FNCSTLPNAT FSTMSSNSIL STSPLARTFN INKFQNWEAC TISSNGSNNS NGSSNSIELQ  300
SNCSFFDNSN AAAAAAFTWG SASAAADGSG KQEREEIKWS EYMQTPFSLG VNNNTIQNHH  360
HEISPHHQDL YDGETKSETQ FMTHGTWLQN QTPQTSLQTA DLYSNNNFQR LPAVFGQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	3e-85	MYB family protein