PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41596.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14964.2 Da    PI: 8.8229
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41596.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-16854450
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                + k ++  t+  R++ i  KA ELS+LCd++v+ ii s++g+l++++
  PHT41596.1  8 KKKPKNPKTYQVRKECIKRKAMELSTLCDIKVCTIITSPQGELQTWP 54
                566677789*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MAEEDQSKKK PKNPKTYQVR KECIKRKAME LSTLCDIKVC TIITSPQGEL QTWPENLDAV  60
KEVLDLYTQN LKPEKKRKAS SSEEKDEEDD EGEKDILTLV ESKLDAVNKR IRFLENKNVV  120
DKGKKQRIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.15e-11M-type_MADS family protein