PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41720.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27698.5 Da PI: 9.3416

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.5	3.5e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye++s PHT41720.1 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFAS 59 9***********************************************86 PP
2	K-box	78.7	1.4e-26	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ + +q+e++ L+++++ Lq+++R+llGe+L+ Ls k+L +Le+q+e slk +R++K+++l+++i+el +k + +++en +L kk+ PHT41720.1 81 NPMSEVKFWQREVSSLRQQLHCLQENHRKLLGEELSGLSTKDLTNLENQIEMSLKGVRKQKEQILTDEIRELNRKGNLIHQENVELYKKV 170 6678899********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGKIVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFASN 60 SMRSTIDRYN KIKEENNNLM NPMSEVKFWQ REVSSLRQQL HCLQENHRKL LGEELSGLST 120 KDLTNLENQI EMSLKGVRKQ KEQILTDEIR ELNRKGNLIH QENVELYKKV NLIQQEYTEL 180 QKVSEQGCGS EPNGGVQATH TIRNGYDLHA PINLQLSQPQ TQKNGTSTSV MQLGLQLHYT 240 ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	8e-96	MIKC_MADS family protein