PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41738.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-PHD

Protein Properties

Length: 899aa MW: 98650 Da PI: 5.2589

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38	2.8e-12	558	611	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 kR ++ + +++L e F++n+yp++ ++e+L k+lg+t qV+ WF N R ++ PHT41738.1 558 KRKAYGEVATKRLYESFKENNYPNRGAKEKLGKELGMTAYQVSKWFENARHCQR 611 788999999****************************************97665 PP
2	PHD	38.2	3.4e-13	214	269	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCd +C++ fH+ C++++l +e++p + wlC+ C++k PHT41738.1 214 FCAKCGSmdLPADNDIILCDgTCERGFHQLCVEPPLLKEDIPPDdeGWLCPGCDCK 269 699**87677****56***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence
MSTLGNTAVS PEKVARTAAG GHSSASAGSM SENPGAEQSR EACDNAVQNL NQSECREKTP 60 GQPRKRKSIS GTPISSTRLL RSKSKEKSGA SEVNNTVVTH DTAEEKRRKR RKKKHSKDIA 120 VNEFTRIRGH LRYLLHRITY EQTLIEAYSG EGWKGQSLEK IKLEKELQRA KTHIFRYKLK 180 IRDLFQRLDT LLAQGRLPAS LFDNEGEIDS EDIFCAKCGS MDLPADNDII LCDGTCERGF 240 HQLCVEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTDLSVTDSW EKVYPKEAAA 300 AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNDSEDESS SDESDFYSAS EDLAEAPPKD 360 DEILALSSED SEDDDFNPDD PDKDESVKTE SSSSDFTSDS EDFSLIVDTD MLRGDEQGVS 420 SSVDNSMPNL ASQEEKAKVG KGKRNLLKDE LSYLMQSVSP LVSAKRHIER LDYKKLNDET 480 YGNESSDSSD EEYEGGPSPK VRKFRNAKGA MASPSSTTAD IKYQSGKQKG SGPTSDSGLS 540 EKLKVGGMST PGSRSSGKRK AYGEVATKRL YESFKENNYP NRGAKEKLGK ELGMTAYQVS 600 KWFENARHCQ RHSSRWDTIM SQKVSRESPS SSKMIGEPLG IESKSNMNDA FCNGVEKLEP 660 PNLCSNGEKC HTVNKSEGDV LIQDASGKES GKPTAKVDTT NQGSDVTPFN RTSKKQKAKV 720 GTANSQNDNT TDQGSDDTPQ NKTSKKQKAK VGTANSQNVD TTDQGADATP HNKTPKKPND 780 KWKDVTKPED IGGLGIQGLA HKNLALLASS AWRLSFQRPL GSGRNKCTFE GLQFQITLAR 840 AIPLATEFWF LAGRAKPAKQ TIPMYVKWNP PAPESTMLNT DSTFRPGTNH ATIAEVLLQ

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence

MSTLGNTAVS PEKVARTAAG GHSSASAGSM SENPGAEQSR EACDNAVQNL NQSECREKTP  60
GQPRKRKSIS GTPISSTRLL RSKSKEKSGA SEVNNTVVTH DTAEEKRRKR RKKKHSKDIA  120
VNEFTRIRGH LRYLLHRITY EQTLIEAYSG EGWKGQSLEK IKLEKELQRA KTHIFRYKLK  180
IRDLFQRLDT LLAQGRLPAS LFDNEGEIDS EDIFCAKCGS MDLPADNDII LCDGTCERGF  240
HQLCVEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTDLSVTDSW EKVYPKEAAA  300
AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNDSEDESS SDESDFYSAS EDLAEAPPKD  360
DEILALSSED SEDDDFNPDD PDKDESVKTE SSSSDFTSDS EDFSLIVDTD MLRGDEQGVS  420
SSVDNSMPNL ASQEEKAKVG KGKRNLLKDE LSYLMQSVSP LVSAKRHIER LDYKKLNDET  480
YGNESSDSSD EEYEGGPSPK VRKFRNAKGA MASPSSTTAD IKYQSGKQKG SGPTSDSGLS  540
EKLKVGGMST PGSRSSGKRK AYGEVATKRL YESFKENNYP NRGAKEKLGK ELGMTAYQVS  600
KWFENARHCQ RHSSRWDTIM SQKVSRESPS SSKMIGEPLG IESKSNMNDA FCNGVEKLEP  660
PNLCSNGEKC HTVNKSEGDV LIQDASGKES GKPTAKVDTT NQGSDVTPFN RTSKKQKAKV  720
GTANSQNDNT TDQGSDDTPQ NKTSKKQKAK VGTANSQNVD TTDQGADATP HNKTPKKPND  780
KWKDVTKPED IGGLGIQGLA HKNLALLASS AWRLSFQRPL GSGRNKCTFE GLQFQITLAR  840
AIPLATEFWF LAGRAKPAKQ TIPMYVKWNP PAPESTMLNT DSTFRPGTNH ATIAEVLLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	112	KRRKRRK
2	106	114	KRRKRRKKK
3	107	113	KRRKRRK
4	108	114	KRRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-89	HB-PHD family protein