PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41819.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 919aa MW: 102401 Da PI: 6.8818

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41819.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.9e-29	617	667	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ PHT41819.1 617 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 667 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence
MEDGAFTLND MLAKLSDNTT ATDFSFMGEF LSDGFWLEAT DQGSNYFCCQ PALPFTTTSS 60 LPSQPLSFDT NVSIPSTNQV AFQQETEKDK IADNLFVPQM DESSAPTRDN THTSPRPDSS 120 AFQVEGTQMN RRLWIGPNTL TNPNPTLSVK TRLVQAIEYL KNSTRDKDVL IQIWVPVKRG 180 GKHVLVTNNQ PYFINPNSQS LLEYRYVSQN YQFAAEKDSK ELVGLPGRVF LKKLPEWTPD 240 VRFFKREEYP RVNYAHQHNV RGSIAVPVFE SGSGTCLGVV EIVTTIQKTH YHPELEDVCK 300 ALEAVNLRSS GISSNPAKVK DCNESYLVAL AEIQYILTCV CDTHKLPLAQ TWAPCIQQGK 360 GGCLQSDEHF ASCVSTVDSA CYVRDPQVVP FHFACSEYHL LKGEGVAGGA FNTNQPCFAT 420 DITAFSKAEY PLSHHARMFG LCSAVAIRLR SIYTGSADFV LEFFLPLDCK NTEDQKQMLS 480 SLSSVIQQSC RSLRVVTDQE LQEEKVSLSV GGSHEEEARK PVSPSYRDQD SSSWLSEMMD 540 AQRKGKGAAV SENHRDKQEE NFKVTATPWD YTQREPIHAS TFSEPNQSFV AKGGSFDFSS 600 HSSGAKRAGE RRRSKTEKSI SLQVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP 660 SRKIKKVGHS LQKLQLVIDS VHGAEGAIKL SSFYTNFPEL SSPNNPGTSN LSASKDDDHL 720 QQVNTQLDVS PVTTTSKSTS SSGSHNSSSS LLCSTTNVFA TTEEHPARML KRAHTETELH 780 DMGQEETKLL VRSQSQKIQS NHNSSEPLRP LPNQLLQDSG TFKVKAIFGK EKIRFSLQSH 840 WGFGDIQHEV LRRFNVEDVG KIDLKYLDDD DEWVLLTCDA DLEECIDIHK LSKRRTIKVS 900 LHHTYHHNLG SSFGSSGPA

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence

MEDGAFTLND MLAKLSDNTT ATDFSFMGEF LSDGFWLEAT DQGSNYFCCQ PALPFTTTSS  60
LPSQPLSFDT NVSIPSTNQV AFQQETEKDK IADNLFVPQM DESSAPTRDN THTSPRPDSS  120
AFQVEGTQMN RRLWIGPNTL TNPNPTLSVK TRLVQAIEYL KNSTRDKDVL IQIWVPVKRG  180
GKHVLVTNNQ PYFINPNSQS LLEYRYVSQN YQFAAEKDSK ELVGLPGRVF LKKLPEWTPD  240
VRFFKREEYP RVNYAHQHNV RGSIAVPVFE SGSGTCLGVV EIVTTIQKTH YHPELEDVCK  300
ALEAVNLRSS GISSNPAKVK DCNESYLVAL AEIQYILTCV CDTHKLPLAQ TWAPCIQQGK  360
GGCLQSDEHF ASCVSTVDSA CYVRDPQVVP FHFACSEYHL LKGEGVAGGA FNTNQPCFAT  420
DITAFSKAEY PLSHHARMFG LCSAVAIRLR SIYTGSADFV LEFFLPLDCK NTEDQKQMLS  480
SLSSVIQQSC RSLRVVTDQE LQEEKVSLSV GGSHEEEARK PVSPSYRDQD SSSWLSEMMD  540
AQRKGKGAAV SENHRDKQEE NFKVTATPWD YTQREPIHAS TFSEPNQSFV AKGGSFDFSS  600
HSSGAKRAGE RRRSKTEKSI SLQVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP  660
SRKIKKVGHS LQKLQLVIDS VHGAEGAIKL SSFYTNFPEL SSPNNPGTSN LSASKDDDHL  720
QQVNTQLDVS PVTTTSKSTS SSGSHNSSSS LLCSTTNVFA TTEEHPARML KRAHTETELH  780
DMGQEETKLL VRSQSQKIQS NHNSSEPLRP LPNQLLQDSG TFKVKAIFGK EKIRFSLQSH  840
WGFGDIQHEV LRRFNVEDVG KIDLKYLDDD DEWVLLTCDA DLEECIDIHK LSKRRTIKVS  900
LHHTYHHNLG SSFGSSGPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein