PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT42019.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20076.1 Da    PI: 7.5075
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT42019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.4e-20249449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyey 49
                +n+sn qvtfskRr+g++KK +EL++LC+ae+a+++fs  + +k+y +
  PHT42019.1  2 KNQSNMQVTFSKRRAGLFKKVNELCTLCGAEIAIVVFSlgKANKVYSF 49
                79**********************************963367777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MKNQSNMQVT FSKRRAGLFK KVNELCTLCG AEIAIVVFSL GKANKVYSFG HPSVDLLVDR  60
FLGRDLPPPN DDGHNHLIMD HQNIGQRGLN KEVMDMQESL QKEKAVGQSL LEFERRAYDR  120
CYESPIIEGL SLSQLQQLKE ALELQKRKVE FEAELRQMVS DALLPLLTFR SALSPSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-31M-type_MADS family protein