PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42171.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 584aa MW: 66316.5 Da PI: 9.2394

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00077	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H PHT42171.1 40 FSCNYCRRKFYSSQALGGHQNAH 62 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MSYEPNTTLN LSLSRNEILL DQSSSSSSSS PLSSNEPRIF SCNYCRRKFY SSQALGGHQN 60 AHKLERTLAK KSREMTTSSL LPHSGWSNNN NNNNNQTSGS LSPSGPSHGG RGYGYGHGAR 120 FVTNNDLMRY GRREMEQRVQ WISDIILSTP KLTFTLIRPL HLHSIFTANP SNVQHILKTN 180 FSLYQKKSNS VLADFLRNGI FNANGDIWKY QRKVASHEFN TRSLRKFVET VVDTELSERL 240 IPILANAAAE ENVVDLQDIL QRFAFDNICK IAFGYDPGYL LPNLPEAEFA VAFEDCVRLS 300 SERFALPCPL IWKMKRALNI GSEKKLQIAV QQVREFAKRI VREKQRELNE KSSLDSADLL 360 SRFLSRGNSD EDFVTDIVIS FILAGRDTTS AALTWFFWLI SKNPEVEFEI LKEIGENAND 420 SVVSYDEVKS MMYTHASLCE SIRFYPPVPM DSKVAAKDDV LPDGTFVRKG TRVTYHPYAM 480 GRSEEIWGKD WAEFKPERWL NKDQVTGNWT FVSKDAYSYP VFQAGPRICL GKEMAFLQMK 540 RVVAGVLQRY KVVPVAKKGV EPLFISYLTA KMKGGFPVTV EERM

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MSYEPNTTLN LSLSRNEILL DQSSSSSSSS PLSSNEPRIF SCNYCRRKFY SSQALGGHQN  60
AHKLERTLAK KSREMTTSSL LPHSGWSNNN NNNNNQTSGS LSPSGPSHGG RGYGYGHGAR  120
FVTNNDLMRY GRREMEQRVQ WISDIILSTP KLTFTLIRPL HLHSIFTANP SNVQHILKTN  180
FSLYQKKSNS VLADFLRNGI FNANGDIWKY QRKVASHEFN TRSLRKFVET VVDTELSERL  240
IPILANAAAE ENVVDLQDIL QRFAFDNICK IAFGYDPGYL LPNLPEAEFA VAFEDCVRLS  300
SERFALPCPL IWKMKRALNI GSEKKLQIAV QQVREFAKRI VREKQRELNE KSSLDSADLL  360
SRFLSRGNSD EDFVTDIVIS FILAGRDTTS AALTWFFWLI SKNPEVEFEI LKEIGENAND  420
SVVSYDEVKS MMYTHASLCE SIRFYPPVPM DSKVAAKDDV LPDGTFVRKG TRVTYHPYAM  480
GRSEEIWGKD WAEFKPERWL NKDQVTGNWT FVSKDAYSYP VFQAGPRICL GKEMAFLQMK  540
RVVAGVLQRY KVVPVAKKGV EPLFISYLTA KMKGGFPVTV EERM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	2e-22	C2H2 family protein