PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42210.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 342aa MW: 38627.5 Da PI: 6.5229

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl PHT42210.1 14 KGPWSPEEDAKLKAYIEENGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39	1.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PHT42210.1 69 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE ENGTGNNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 RKQSQMNRLL LANGGQDLKE LNGLEENPLL QNLSNSALER LQLHMQLQTL TNPLSFYNNP 180 SLWPKLTPLQ QKMIQTLQVN GINEDQPPLY APINPSENHA QELGQKVGMN EFASTNFKVN 240 DQVGKSSPID VLDTNVGQEN TRDQIQIQGV QGFTQLEIDD LILSNKGSIG MNMNSEFDLA 300 WWSNEFDTNR ASASNSWGSS SNILQNTHDE MYQDYALGYS LQ

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE ENGTGNNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
RKQSQMNRLL LANGGQDLKE LNGLEENPLL QNLSNSALER LQLHMQLQTL TNPLSFYNNP  180
SLWPKLTPLQ QKMIQTLQVN GINEDQPPLY APINPSENHA QELGQKVGMN EFASTNFKVN  240
DQVGKSSPID VLDTNVGQEN TRDQIQIQGV QGFTQLEIDD LILSNKGSIG MNMNSEFDLA  300
WWSNEFDTNR ASASNSWGSS SNILQNTHDE MYQDYALGYS LQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-96	MYB family protein