PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT42318.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Nin-like
Protein Properties Length: 157aa    MW: 18153.6 Da    PI: 5.7421
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT42318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK22.62e-0741622749
      RWP-RK 27 vclTvLKriCRqyGIkRWPhRki 49
                ++ ++ KriCR +GI+RW +Rk+
  PHT42318.1 41 LSRSTFKRICRANGIARW-SRKL 62
                7889**************.7776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MDDPNPYKNI HIESLRELQR QFDELQRDLA DFGERLSNEK LSRSTFKRIC RANGIARWSR  60
KLQIAPQPAM ATLTQSNIGV KVSYNGLNVR FPLSLSSGKN DLEVEVEKRF GIQTGSFWIK  120
YEDEDEDWIL ITCDEDLHHG MNTCIERGIT TIKMYVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.11e-11Nin-like family protein