PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42373.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 384aa MW: 42010 Da PI: 9.0787

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	79.4	3.9e-25	75	131	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYYrCt+ +C++kk +e+s++ ++v+ei+Y++eHnh+ PHT42373.1 75 RDGYNWRKYGQKQVKSPQGSRSYYRCTHFECCAKK-IECSDHTNRVMEIIYRSEHNHD 131 7******************************98.*******************7 PP
2	WRKY	95.9	2.7e-30	247	304	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++pr+YYrC+sagCpv+k++er+ + +++++i Y+g H+h+ PHT42373.1 247 SDGYRWRKYGQKMVKGNPHPRNYYRCSSAGCPVRKHIERAVDGTTALTISYKGAHDHD 304 7********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MNAQARTKHQ QRVPDESSTL ELSSTSVAQS ISSVPSPTLA ESRLSAVVNC GTGEVAKQSS 60 DAKVQPLVPV KTSNRDGYNW RKYGQKQVKS PQGSRSYYRC THFECCAKKI ECSDHTNRVM 120 EIIYRSEHNH DPPPSVTCSR ESKSAILSAS TNGKSTIDHP NRNSNETVAS SFKENLQESL 180 PIAETANLDS GGSDTDTEIN IKEEHSDEPE QKKRSRKSDA SCSESVSKPG KKPKLVLYAA 240 CDVGISSDGY RWRKYGQKMV KGNPHPRNYY RCSSAGCPVR KHIERAVDGT TALTISYKGA 300 HDHDMPVPKR RHGPPSAPLI AAAAAPASIT DMKKPEPLQH QKSTTQWSVD KQGELTSEKL 360 DLGGGKAMES ARTLLSIGFE IKPC

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MNAQARTKHQ QRVPDESSTL ELSSTSVAQS ISSVPSPTLA ESRLSAVVNC GTGEVAKQSS  60
DAKVQPLVPV KTSNRDGYNW RKYGQKQVKS PQGSRSYYRC THFECCAKKI ECSDHTNRVM  120
EIIYRSEHNH DPPPSVTCSR ESKSAILSAS TNGKSTIDHP NRNSNETVAS SFKENLQESL  180
PIAETANLDS GGSDTDTEIN IKEEHSDEPE QKKRSRKSDA SCSESVSKPG KKPKLVLYAA  240
CDVGISSDGY RWRKYGQKMV KGNPHPRNYY RCSSAGCPVR KHIERAVDGT TALTISYKGA  300
HDHDMPVPKR RHGPPSAPLI AAAAAPASIT DMKKPEPLQH QKSTTQWSVD KQGELTSEKL  360
DLGGGKAMES ARTLLSIGFE IKPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	1e-100	WRKY family protein