PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT42559.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 242aa MW: 28220 Da PI: 8.4768

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT42559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	6.1e-14	94	137	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 rg W + Ed++l+++v+ +G g W+tI+++ g+ R++k+c++rw PHT42559.1 94 RGFWKPAEDLILKNCVETHGEGIWATISEKSGLLRSGKNCRLRW 137 799***************************99******** PP
2	Myb_DNA-binding	26.5	1.5e-08	136	160	23	48
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l PHT42559.1 136 RWSLIAGRLP-GRTDNEVKNFWNTHL 160 4*******.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MNSENFFSQI APPVFDSENY HLWDVRMETY FEALDIWEAV DEDYEAQEQR MLMRQDGMVE 60 GALTTNHKTH KTQSKGERRK SAMRDKEVKT RMKRGFWKPA EDLILKNCVE THGEGIWATI 120 SEKSGLLRSG KNCRLRWSLI AGRLPGRTDN EVKNFWNTHL NKKRSCRVKK EHVKSKEANT 180 LSPKEKMQEY PAETVSNQEV ATKKVLDSWI EEMQDFNCSL LSPLSMNNMP SFYSHIGRHC 240 LA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	1e-33	MYB family protein