PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT42754.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HB-PHD
Protein Properties Length: 705aa    MW: 79789.1 Da    PI: 8.5465
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT42754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.21.2e-12483527953
                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 ++ +eeL ++F++n  ps++ re L+kklg++ ++V  WF+N R+
  PHT42754.1 483 PDAVEELRRVFAENELPSRDVRENLSKKLGIEYEKVNKWFKNARY 527
                 6889***************************************97 PP
2PHD34.25.6e-12211266151
                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ C+   + ++++++lCd +C+ +fH+kCl+++l++e++p +   w+C+ Ck+k
  PHT42754.1 211 ICAKCKLqeAFSDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKFCKCK 266
                 588898854555********56*******************99999*******985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    
MPGKTDKYLH KEVVSSSQVK NVLRRLEKKR SKLKSKSHGK VTQASSSKRK VAAEGKGRCS  60
SGGNILKKEI LQKAESSKKQ SVLSCQGEDS LKHENLDTRS EKLKRRRKKR RRKRDADPDD  120
VSPLQRRTRY LLIKMKLEQN LIDAYSAEGW KGQSREKIRP EKELQRAKKQ ILNCKLGIRE  180
IVHHLDLLSS AGQIDDSAIA PDGSVHHDHI ICAKCKLQEA FSDNDIILCD GTCNCAFHQK  240
CLDPPLSTEN IPPDDEGWFC KFCKCKMEII EAINAHIGTH FAMDSNWEDI FKEEALRPEG  300
EGSLLCPEQD WPSDDSEDDD YDPEKVANSH SSTDSFDSGS SSEGSSGSML ESLEDELLAL  360
TGKPEGGSSG KDYLSKQIAG LDYEETTDVD VLSAPRQRRA VDYIKLNDEM FGKHAPAIEQ  420
NSEDEDWGPG KRKRRRKESE SDAASTLITL FKSEKSCSEK TANEVEKESF GRPAKREIFR  480
IPPDAVEELR RVFAENELPS RDVRENLSKK LGIEYEKVNK WFKNARYIAL KARKQAESTK  540
PCEVTSPTTS VGRIPDTVKG EPADHISSSD AEENAAQAPK NLGRSPNEET PNLVIRPSKK  600
KHVKKAVKQS TYKVETVVEF GDDMSLKLLR ERAKKERRKL NFKEREKIQE AEAEMQKLCR  660
IKDKIARLQD ILLRFPNHRC RRAGASSLDE SLVVFIPFAE LQDKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103110LKRRRKKR
2104110KRRRKKR
3104112KRRRKKRRR
4104114KRRRKKRRRKR
5105111KRRRKKR
6105113KRRRKKRRR
7105110RRRKKR
8105115RRRKKRRRKRD
9106112KRRRKKR
10106114KRRRKKRRR
11106136RRKKRRRKRDADPDDVSPLQRRTRYLLIKMK
12106116RRRKKRRRKRD
13107113KRRRKKR
14107114LKRRRKKR
15107137RRKKRRRKRDADPDDVSPLQRRTRYLLIKMK
16107117RRRKKRRRKRD
17108113KKRRRK
18108114KRRRKKR
19108138RRKKRRRKRDADPDDVSPLQRRTRYLLIKMK
20109139RRKKRRRKRDADPDDVSPLQRRTRYLLIKMK
21110140RRKKRRRKRDADPDDVSPLQRRTRYLLIKMK
22431436KKRRRK
23431437KRRRKKR
24432436RKRRR
25432438RKRRRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.23e-95HB-PHD family protein