PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT42784.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 439aa    MW: 48666.5 Da    PI: 5.1985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT42784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.22.8e-113784363374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lLl+cAe+v+ ++le a +lL ++ el+sp g++ +R+aayf+eAL+ar+ +s  + y+ l+ ++ + ++s++ ++al+ ++ +sP++kfsh taNqa
  PHT42784.1  78 GLLLQCAECVAMENLEDAGNLLPEIAELSSPFGSSAERVAAYFAEALSARIISSHLRFYSPLNLKALTLTHSQKLFTALQSYNTISPLIKFSHYTANQA 176
                 58************************************************************************************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 I++a+e e++vHiiD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s e le+tg+rLa+fA+++g+pfef++l  k  +  +l++L vk +E
  PHT42784.1 177 IYQALECEDHVHIIDLDIMQGLQWPGLFQILSSRSRKLRSIKITGVGS----SMELLESTGRRLAEFANSFGLPFEFKPLEGKIGHVRNLSQLGVKAEE 271
                 ************************************************....***************************8777777779********** PP

        GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                 a++Vn+++  h l+d ++s       + +l+  l+Pk+++ veqe++h +++Fl rf+eal+yysalfd+l  +l++es er++vE++l+g ei+n+va
  PHT42784.1 272 AIVVNWMH--HCLYDVTGSDLG----TFRLLTLLRPKLITTVEQELSH-GGNFLGRFVEALHYYSALFDALGDGLGEESVERHMVEQQLFGSEIRNIVA 363
                 *******9..888888888888....99********************.789*********************************************** PP

        GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   g +r  +    e+W + ++++GF pv+ls + a+qa+lll +++ +gy++ ee+g+l lgWkd +L+++SaW+
  PHT42784.1 364 VGGPKRSGEV-PIERWGDEFKRVGFLPVSLSGTPAAQASLLLGMFP-RGYTLVEENGCLKLGWKDLSLLTASAWQ 436
                 ****977665.6**********************************.***************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    
MLYSLQISFI NHTTICSSSS TMSSKRSIVE FTPPATDEDP VFTKRPRHFP SSEREEDEEE  60
GEEVVHVDAD SIGLRLLGLL LQCAECVAME NLEDAGNLLP EIAELSSPFG SSAERVAAYF  120
AEALSARIIS SHLRFYSPLN LKALTLTHSQ KLFTALQSYN TISPLIKFSH YTANQAIYQA  180
LECEDHVHII DLDIMQGLQW PGLFQILSSR SRKLRSIKIT GVGSSMELLE STGRRLAEFA  240
NSFGLPFEFK PLEGKIGHVR NLSQLGVKAE EAIVVNWMHH CLYDVTGSDL GTFRLLTLLR  300
PKLITTVEQE LSHGGNFLGR FVEALHYYSA LFDALGDGLG EESVERHMVE QQLFGSEIRN  360
IVAVGGPKRS GEVPIERWGD EFKRVGFLPV SLSGTPAAQA SLLLGMFPRG YTLVEENGCL  420
KLGWKDLSLL TASAWQPCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-157GRAS family protein