PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43018.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 517aa MW: 58216.7 Da PI: 6.5778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	342	387	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ Lr+llP+a +K +Ka++L ++eY++sL PHT43018.1 342 HHMISERRRREKLNDSFQLLRSLLPPA-----TKKDKASVLASTTEYLSSL 387 68899*******************9.....9**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MDSIFFLEEG DRADFLLKIM ESFGCSYICL WQYFQPSNTF MSLGGIYNGE NDVAQRLFEE 60 YKHSWLSMDN GRIPGLAFKN NLPYMELQFT DLQSHASNPV QLQFYLTTIC MACSIGEIEF 120 GMTSSHQVNL ELGMKHLFPE YLSSPAAAAA ISGLPHHQPL LSMDQNRPSS SSSFSLDSPG 180 EYSSLLFNVA SASYVPEPPR VDAFPEQTIR PVSATAMPYH QQQAIQTTLT QTQIRGIQFP 240 RVETEDAALT RAYLAVMTSP SSSSSSHQSR EHNEPTDHYQ KSTAFRRFRS GLGPNYVQIA 300 AKTTRRENML RRSITFFRNL NMMRRQEQIQ TNPRAPTSTQ VHHMISERRR REKLNDSFQL 360 LRSLLPPATK KDKASVLAST TEYLSSLKGQ VEELSKKNEM LEAQLVKPQM RSNAIISSCA 420 YDGNERVAVE IINVGESTSE SRIADLQVSV RGECSVLDLV TRLLQFLKTD SNLTLESAAA 480 NTRPMVTHIT LRIRIEGTEW DESAFEEAVK RVVGDSA

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MDSIFFLEEG DRADFLLKIM ESFGCSYICL WQYFQPSNTF MSLGGIYNGE NDVAQRLFEE  60
YKHSWLSMDN GRIPGLAFKN NLPYMELQFT DLQSHASNPV QLQFYLTTIC MACSIGEIEF  120
GMTSSHQVNL ELGMKHLFPE YLSSPAAAAA ISGLPHHQPL LSMDQNRPSS SSSFSLDSPG  180
EYSSLLFNVA SASYVPEPPR VDAFPEQTIR PVSATAMPYH QQQAIQTTLT QTQIRGIQFP  240
RVETEDAALT RAYLAVMTSP SSSSSSHQSR EHNEPTDHYQ KSTAFRRFRS GLGPNYVQIA  300
AKTTRRENML RRSITFFRNL NMMRRQEQIQ TNPRAPTSTQ VHHMISERRR REKLNDSFQL  360
LRSLLPPATK KDKASVLAST TEYLSSLKGQ VEELSKKNEM LEAQLVKPQM RSNAIISSCA  420
YDGNERVAVE IINVGESTSE SRIADLQVSV RGECSVLDLV TRLLQFLKTD SNLTLESAAA  480
NTRPMVTHIT LRIRIEGTEW DESAFEEAVK RVVGDSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	ERRRRE
2	348	353	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-65	bHLH family protein