PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43072.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 526aa MW: 58340.4 Da PI: 6.7587

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.9	4.9e-29	257	314	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ f+rsYY+Ct+++C +kk+vers+ d+++++i Y +H h+k PHT43072.1 257 EDGYNWRKYGQKLVRGNMFTRSYYKCTHPNCLAKKQVERSH-DGHITNIQYITNHGHPK 314 7**************************************.*************85 PP
2	WRKY	105.3	3.1e-33	434	492	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 l+Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+ver+++dpk+v++ Yeg+H+h+ PHT43072.1 434 LNDGYRWRKYGQKFVKGNPNPRSYYRCSSAGCPAKKHVERASHDPKLVITAYEGQHEHD 492 58********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MSKLNLHRND MIDEGRMGIS EDDMTDEISS RKLKQKQDPD TVINGSESTE KGTCESMSAE 60 VVSNELHKRP NPDALAKVSQ SNRDESAHPT TCQGVLNEGQ PRRNVDKEIN VSQSNQKYSS 120 LSNVPEENSE NVHQEKGPES EVGASESSRV SVLPKEEPYI KSCKSDSPVK EGNISLVVGM 180 ASDCSPQIQS KKMEEVVSQS HQERVTYSTM AENAMYKLRP RRNPDTSVQD LPSDEGVRDL 240 PSDQGVTPFS EPEKPFEDGY NWRKYGQKLV RGNMFTRSYY KCTHPNCLAK KQVERSHDGH 300 ITNIQYITNH GHPKPLNSPQ ISPEVVVPSE MRRPDMLMGT PQAEGGKSTA LGQACESIEP 360 LESLISAAVE SAGGSARDTV PKPLKSGDEG DSNGGRNSKR RKKEVPRSDD MTPPMKSHSE 420 PRHIVQTRSE VDILNDGYRW RKYGQKFVKG NPNPRSYYRC SSAGCPAKKH VERASHDPKL 480 VITAYEGQHE HDIPLSRTVT QNSDSNTTRI SGESTSESGG NKHVDN

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MSKLNLHRND MIDEGRMGIS EDDMTDEISS RKLKQKQDPD TVINGSESTE KGTCESMSAE  60
VVSNELHKRP NPDALAKVSQ SNRDESAHPT TCQGVLNEGQ PRRNVDKEIN VSQSNQKYSS  120
LSNVPEENSE NVHQEKGPES EVGASESSRV SVLPKEEPYI KSCKSDSPVK EGNISLVVGM  180
ASDCSPQIQS KKMEEVVSQS HQERVTYSTM AENAMYKLRP RRNPDTSVQD LPSDEGVRDL  240
PSDQGVTPFS EPEKPFEDGY NWRKYGQKLV RGNMFTRSYY KCTHPNCLAK KQVERSHDGH  300
ITNIQYITNH GHPKPLNSPQ ISPEVVVPSE MRRPDMLMGT PQAEGGKSTA LGQACESIEP  360
LESLISAAVE SAGGSARDTV PKPLKSGDEG DSNGGRNSKR RKKEVPRSDD MTPPMKSHSE  420
PRHIVQTRSE VDILNDGYRW RKYGQKFVKG NPNPRSYYRC SSAGCPAKKH VERASHDPKL  480
VITAYEGQHE HDIPLSRTVT QNSDSNTTRI SGESTSESGG NKHVDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	3e-70	WRKY family protein