PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT43130.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25315.9 Da    PI: 8.7903
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT43130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45.1e-2071121151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 k+ie+++ rq t+sk +  + KKA+EL +LCd++va+++fs+tg++  yss
  PHT43130.1  71 KKIEDSTSRQRTYSKHKDSLVKKANELAILCDTDVALLMFSPTGEVTRYSS 121
                 68**********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MKLIQYSNET FPSIFSRLRN TKPRMLRSTD LRRELKIKPK LLTLDGVKEN VNQSGGSSLR  60
SSMGRNKLVM KKIEDSTSRQ RTYSKHKDSL VKKANELAIL CDTDVALLMF SPTGEVTRYS  120
SRGRCYEPQV ENISSVQEAD AYQEFLLSAM EQIRSQARLL GGEGYLQINE NVGVKWLRST  180
QRLPLLQVMD LHIQSEEPVG DTSCEEIDWI ATDRALASGV EQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.18e-17M-type_MADS family protein