PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43211.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 399aa MW: 44092.9 Da PI: 8.9839

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6.1e-16	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l + v+++G g+W+++ r g+ R++k+c++rw ++l PHT43211.1 25 KGPWTTTEDTILTEHVRKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 72 79******************************************9986 PP
2	Myb_DNA-binding	50.9	3.6e-16	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++++lG++ W++ a ++ gRt++++k++w++ PHT43211.1 78 KGAFSPEEERIIIELHAKLGNK-WARMATQLP-GRTDNEIKNYWNT 121 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MATNDRGMKN SGGKNGGGNR QVVKKGPWTT TEDTILTEHV RKHGEGNWNA VQRNSGLMRC 60 GKSCRLRWAN HLRPNLKKGA FSPEEERIII ELHAKLGNKW ARMATQLPGR TDNEIKNYWN 120 TRLKRRQRAN LPIYPQELQS QNQPEHNQAQ QSLISSAFDP QRTTYNNPPS LSLLGILNPS 180 SMRPPITHQF PLNGNNIFRN PPKGLSMTPP SSMQNSQFSS LLVSVSNNNF GHGMFNSTPM 240 PSFQQTYPDF SSTMRPFLGN IPSNQNGLMF DMGINSINYP SGQLSMPVTT SSSSENTSSG 300 IGSSDANNYT NVGGLSRGNS GLLEDLLEES QTLTRAMKIE ERGKSLWENY GLVEKELGDH 360 QDGAIFTEES VYSFAHGDDV TLNNNSESSS SNPNASPGD

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MATNDRGMKN SGGKNGGGNR QVVKKGPWTT TEDTILTEHV RKHGEGNWNA VQRNSGLMRC  60
GKSCRLRWAN HLRPNLKKGA FSPEEERIII ELHAKLGNKW ARMATQLPGR TDNEIKNYWN  120
TRLKRRQRAN LPIYPQELQS QNQPEHNQAQ QSLISSAFDP QRTTYNNPPS LSLLGILNPS  180
SMRPPITHQF PLNGNNIFRN PPKGLSMTPP SSMQNSQFSS LLVSVSNNNF GHGMFNSTPM  240
PSFQQTYPDF SSTMRPFLGN IPSNQNGLMF DMGINSINYP SGQLSMPVTT SSSSENTSSG  300
IGSSDANNYT NVGGLSRGNS GLLEDLLEES QTLTRAMKIE ERGKSLWENY GLVEKELGDH  360
QDGAIFTEES VYSFAHGDDV TLNNNSESSS SNPNASPGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	18	GGKNGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	3e-72	MYB family protein