PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT43260.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 125aa    MW: 14479 Da    PI: 10.672
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT43260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.18.5e-221762449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +n+s  qvtfskRr+gi+KKA+EL++LC+ae+a+++f ++ k+y +
  PHT43260.1 17 KNESSLQVTFSKRRAGIFKKASELCTLCGAEIAIVVFFPEKKVYSF 62
                799999**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    
MARRRKGRQR VYIVKMKNES SLQVTFSKRR AGIFKKASEL CTLCGAEIAI VVFFPEKKVY  60
SFGHPSVELL VDRFLGRNLP PPNNDGRQNH LLMNHRNVVL RELNKEVMNM EEILQMEKAH  120
GESIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-41M-type_MADS family protein