PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43350.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 245aa MW: 28177.2 Da PI: 10.0989

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	114	168	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ + ++ +++eLA++l+L+ rqV vWFqNrRa+ k PHT43350.1 114 RKKLRLTKEQSTLLEDSFKLHTTLAMGQKQELAAQLKLKPRQVEVWFQNRRARTK 168 678899***********************************************98 PP
2	HD-ZIP_I/II	114.3	7.5e-37	114	202	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+sF+ +++L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+ en+rL+ke +eLr+ PHT43350.1 114 RKKLRLTKEQSTLLEDSFKLHTTLAMGQKQELAAQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNGENNRLKKELQELRS 202 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MEQFHYNSQI IPSYFLQLKR SLTKASPAPT RPLSMGNDDN EACDTRLTLG LATSDHHILP 60 KQNQDNHKKI TCLDLSIIPL HSSHDGTDKI DGSSSKTCKN YTKFNNESKK IGMRKKLRLT 120 KEQSTLLEDS FKLHTTLAMG QKQELAAQLK LKPRQVEVWF QNRRARTKLK QTEVDCEFLK 180 KWCQSLNGEN NRLKKELQEL RSIKIDQRIH LQLSKARTLA LCSSCRKISR GDTDEKHETG 240 TESGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	171	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	9e-49	HD-ZIP family protein