PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43364.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 247aa MW: 28383.4 Da PI: 6.7809

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G+ +W+ +++ g+ R++k+c++rw++yl PHT43364.1 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLERCGKSCRLRWLNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	59.6	6.8e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++ PHT43364.1 67 RGNYTEEEDEIILNLHAQLGNK-WSAIAGHLP-GRSDNEIKNHWHT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MVRTPCCDEN GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLERCG KSCRLRWLNY 60 LRPNVKRGNY TEEEDEIILN LHAQLGNKWS AIAGHLPGRS DNEIKNHWHT ALKKRANNSG 120 ESSKKCNSKN NIRRSTSVAN KNASPSTSHE NIVLESSQWS PKESSSEDFF SYSNTDYQEQ 180 HEVFQQEALD EITSGSFWTE PFLVESFHTT GTDFLAPPID YCGLVCPPSP FIGHEFLSSF 240 DFDHFNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	7e-58	MYB family protein