PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43366.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 258aa MW: 29653 Da PI: 8.4563

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G+ +W+ +++ g+ R++k+c++rw +yl PHT43366.1 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWMNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	58.6	1.5e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++ PHT43366.1 67 RGNYTKEEDEIILNLHAQLGNK-WSAIAVHLP-GRSDNEIKNHWHT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MVRTPCHDEK GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWMNY 60 LRPNVKRGNY TKEEDEIILN LHAQLGNKWS AIAVHLPGRS DNEIKNHWHT ALKKRANYAS 120 TSSDVSSKKS NKKKNSGSNT RRTSTSVENK NASSSMSIVA SHENIVLESS DWSPKESSSE 180 EFSSYNTTDY QEQHKIFQEA LEDITSGSFW TEPFVVESFN TTRIDFLAPS IDCELMCPPS 240 PFIGQEFLSS FDFDHYNW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	9e-55	MYB family protein