PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43583.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 461aa MW: 53110.8 Da PI: 4.7242

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	111.6	1e-34	168	415	57	294
GRAS 57 vselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg. 153 +e+ ++ + ++++ + aa+k+f++v+P+ kf+h+taN+aI e v + ++vHi+Dfd+++ +QWp++++a +R++ slR T +++ e++ PHT43583.1 168 AEEIEDQGSYLRQES--GKIIDAAFKVFYQVFPLGKFAHFTANSAIIEVVPDDeQTVHIVDFDMGEWIQWPPIIEATGKRRK---SLRFTSIKKTEEEs 261 445554444444443..333345889*********************976659********************966...5**9988778 PP GRAS 154 ..skeeleetgerLakfAeelgvpfefnvlvakrl.edleleeLrvkp....gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvv 240 ++ + eet++rL ++A+ +g++++ + ++ ++l ++l+ + + E l+ n++++l ++ ++ ++ +e+L + s+ +v+ PHT43583.1 262 tsDQWRFEETKRRLLDYANLFGLRLQVEEMTIEELaSELRRMK----KrgkgSEWLVFNCMFKLPHMGKRMCRIDAleflkLATELLLAKYSTHKGLVT 356 88999*******************984443303333333....34456***********97777766644443455666666677889* PP GRAS 241 vveqe...adhnse.sFlerflealeyysalfdsleaklpres.eerikvErellgrei 294 + + e ++hn++ ++ + f + l yy ++++sle +p+ ++r +E +l++++ PHT43583.1 357 FGDGEatdISHNTNyTYSAFFNKNLIYYQSILESLEFCFPAYLaQARLAMESLFLAPQV 415 *985445674444999999**************99877*******999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MQSELLHNSW CSTFHQTEFC GIQSDYENGK HGITNSSLNS KDQDSSRISF LDFTSQSFSD 60 FTSLFSDDNV LTDLLMDDSE FNDVCRWLND NEREGYGNMN NLSSEMKRDG DLWSPDLSGV 120 SCELLPLAIS ATSLILPGNI REMDSQMSLH HLLADYGEAM ENGPKELAEE IEDQGSYLRQ 180 ESGKIIDAAF KVFYQVFPLG KFAHFTANSA IIEVVPDDEQ TVHIVDFDMG EWIQWPPIIE 240 ATGKRRKSLR FTSIKKTEEE STSDQWRFEE TKRRLLDYAN LFGLRLQVEE MTIEELASEL 300 RRMKKRGKGS EWLVFNCMFK LPHMGKRMCR IDALEFLKLA TELLLAKYST HKGLVTFGDG 360 EATDISHNTN YTYSAFFNKN LIYYQSILES LEFCFPAYLA QARLAMESLF LAPQVFSFSW 420 IKIWEEKRSV SYSCEEIELQ GKRVSKELSV TSQRTSERKR N

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MQSELLHNSW CSTFHQTEFC GIQSDYENGK HGITNSSLNS KDQDSSRISF LDFTSQSFSD  60
FTSLFSDDNV LTDLLMDDSE FNDVCRWLND NEREGYGNMN NLSSEMKRDG DLWSPDLSGV  120
SCELLPLAIS ATSLILPGNI REMDSQMSLH HLLADYGEAM ENGPKELAEE IEDQGSYLRQ  180
ESGKIIDAAF KVFYQVFPLG KFAHFTANSA IIEVVPDDEQ TVHIVDFDMG EWIQWPPIIE  240
ATGKRRKSLR FTSIKKTEEE STSDQWRFEE TKRRLLDYAN LFGLRLQVEE MTIEELASEL  300
RRMKKRGKGS EWLVFNCMFK LPHMGKRMCR IDALEFLKLA TELLLAKYST HKGLVTFGDG  360
EATDISHNTN YTYSAFFNKN LIYYQSILES LEFCFPAYLA QARLAMESLF LAPQVFSFSW  420
IKIWEEKRSV SYSCEEIELQ GKRVSKELSV TSQRTSERKR N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	3e-16	GRAS family protein