PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT43829.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 177aa MW: 20722.3 Da PI: 6.5314

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT43829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.8e-18	17	69	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++eq++ Le+ Fe+++++ +++ +L+k+lg++ rq+++W+qNrRa++k+ PHT43829.1 17 KRLNQEQVKLLEASFESTKKLELQKKLQLSKELGVPPRQISIWYQNRRARWKN 69 5689***********************************************95 PP
2	HD-ZIP_I/II	100.2	1.9e-32	15	106	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqvklLE sFe+++kLe ++K +l++eLg+ prq+ +W+qnrRAR+k+++lE+dy+aL+ ++++ +e+ +Leke+e Lr el++ PHT43829.1 15 NKKRLNQEQVKLLEASFESTKKLELQKKLQLSKELGVPPRQISIWYQNRRARWKNQNLENDYNALQLKLENALSEKMQLEKETEFLRGELQR 106 69*************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MNSSFNSQNL QKYPNKKRLN QEQVKLLEAS FESTKKLELQ KKLQLSKELG VPPRQISIWY 60 QNRRARWKNQ NLENDYNALQ LKLENALSEK MQLEKETEFL RGELQRANEM LIAINSGAQG 120 QIREFSLSSS CCDQDVISYT STTWVHTDHE VNYNLQFDEL YAMIGVEEGS NKCYSTW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-23	HD-ZIP family protein