PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT43923.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 206aa    MW: 24198.6 Da    PI: 9.177
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT43923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.44.9e-15442341
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                i+++ nr+ tf kR++ ++KK +EL +LC++++++ii++
  PHT43923.1  4 IQDHKNRKSTFVKRKASLIKKISELAILCGIKACMIIYG 42
                899***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MELIQDHKNR KSTFVKRKAS LIKKISELAI LCGIKACMII YGGIDDQVVP QHDQIWANDP  60
KEVEELINLY KNQPLEGRSK RAKSLSNFFE NQKKKKAEIK EEKYPTWYSR FDYLSEKELL  120
NLARVLEKRI DDAKGKAEFL KSANIGSSSL LSHQEIRDYT EQQRLQLDEP NYLSVAFYRL  180
QQLLSRKYSK WCDFNGREDG DSTSYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.17e-16M-type_MADS family protein