PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT44127.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 288aa    MW: 32811.7 Da    PI: 6.7852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT44127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd +l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
       PHT44127.1 17 KGPWSSEEDIRLIAFIQKHGHHNWRSLPKQAGLLRCGKSCRLRWINYL 64
                     79******************************99************97 PP
2Myb_DNA-binding54.13.5e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
       PHT44127.1  70 RGNFTPQEEETIIKLHQSFGNK-WSRIASHLP-GRTDNEIKNVWNTHL 115
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MMGKGRAPCC DKSKVKKGPW SSEEDIRLIA FIQKHGHHNW RSLPKQAGLL RCGKSCRLRW  60
INYLRPDVKR GNFTPQEEET IIKLHQSFGN KWSRIASHLP GRTDNEIKNV WNTHLKKRLM  120
KRLHGDKAKL DGTCANSQSS SSSTSVVSHT DDTSNEGKFN MIIENATKEE EATKSCSPTS  180
SYASNLSNLS QVHEASSPNN VDMDWIFQFS EEPFPSSTTR KVHDDDDEGI IEIPLECDVD  240
FWDMLDIMGP PPPNSESKLD HHTEASCQGL SEFERQKWFT YFERELGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.13e-81MYB family protein