PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT44272.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 244aa    MW: 26811.7 Da    PI: 8.0092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT44272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-203483255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++ l+g
  PHT44272.1 34 RFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 83
                69*******.**********883....5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MRRGRAAAAA ARQIPAPAPV AGEINGSGGS KEVRFRGVRK RPWGRFAAEI RDPWKKTRVW  60
LGTFDSAEDA ARAYDAAART LRGPKAKTNF PSDTTNNNNL LPYANHFHHH EMNVNVNDAL  120
VDSRLYPQYH RHIISQRPTS SSMSSTVESF SGPRPPPLRQ HTAAPSRKYP RSPPVVPDDC  180
HSDCDSSSSV IDDGDGENDN VNIASSSFRK LLPFDLNFPP PMDDSVGDDA YADADDLRCT  240
ALCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.16e-30ERF family protein