PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT44320.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 448aa    MW: 50586.2 Da    PI: 7.9034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT44320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.83.5e-130614482374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn........sseelaal......kl. 83 
                 ++lL++cAe +s +d+++a++lL+ ls ++sp gd+++Rl++ ft+AL+ rl+r  s+s++ + l+p ++ +++        s              l 
  PHT44320.1  61 RQLLISCAELISRSDFSAANRLLNILSANSSPFGDSTERLVHQFTRALSLRLNRyiSSSTTNHFLTPVTSINETapadssssS------SsslsslALl 153
                 89****************************************************85555566666655554444565554332......1233444224 PP

        GRAS  84 ......fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                       +++v+P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R  ++p+lRiTg g+    + ++l++tg+rLakfA++lg++
  PHT44320.1 154 qssylsLNQVTPFIRFTQLTANQAILEAINGNqQAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLR 247
                 445667*************************98999**********************9.899**********....********************** PP

        GRAS 176 fefnvl..vakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                 f+f++l  +++r +d +++ +    + p+E+la+n+v+ lhrll+++ +l+     +L+ vks++Pk+v+++e+ea+hn++ Fl+rf+eal+yy+a+fd
  PHT44320.1 248 FQFHPLyiASNRDHDEDPSIIssiVLLPDETLAINCVFYLHRLLKDREKLRV----FLHRVKSMNPKIVTIAEREANHNHPLFLQRFVEALDYYTAVFD 342
                 ******7544466666665551116677****************88888888....******************************************* PP

        GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                 slea+lp+ s+er++vE++++grei ++va eg++r+erhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++   s+s++lgW+++pL
  PHT44320.1 343 SLEATLPPGSRERMTVEQVWFGREILDIVAIEGEKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLRVLSNSFLLGWQNQPL 441
                 *************************************************************************************************** PP

        GRAS 368 vsvSaWr 374
                 +s+S+Wr
  PHT44320.1 442 FSISSWR 448
                 ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    
MLGSFGSSSS QSHSHPHHHD EQESTDHHHD DHQRRRFIAA AAAATATTTI TATITPVIQI  60
RQLLISCAEL ISRSDFSAAN RLLNILSANS SPFGDSTERL VHQFTRALSL RLNRYISSST  120
TNHFLTPVTS INETAPADSS SSSSSSLSSL ALLQSSYLSL NQVTPFIRFT QLTANQAILE  180
AINGNQQAIH IVDFDINHGV QWPPLMQALA DRYPAPTLRI TGTGNDLDTL RRTGDRLAKF  240
AHSLGLRFQF HPLYIASNRD HDEDPSIISS IVLLPDETLA INCVFYLHRL LKDREKLRVF  300
LHRVKSMNPK IVTIAEREAN HNHPLFLQRF VEALDYYTAV FDSLEATLPP GSRERMTVEQ  360
VWFGREILDI VAIEGEKRKE RHERFRSWEV MLRSCGFSNV ALSPFALSQA KLLLRLHYPS  420
EGYQLRVLSN SFLLGWQNQP LFSISSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-130GRAS family protein