PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT44542.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 929aa    MW: 105030 Da    PI: 6.1712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT44542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.32.6e-895609281374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshl 96 
                 lv+lLl++Ae v++++++la++ +ar    as +g+p+qRl +yf eAL++r+ +   ++ ++ + +++ +        ++  + + +   P+ ++ ++
  PHT44542.1 560 LVHLLLAAAEEVDQQQFHLASQSIARCLWKASATGNPIQRLCFYFGEALQERIDH---KIGRSPSFERKLRFLstlALGTTPEVLTCHTEIPFSQVMQF 655
                 68***************************************************99...333222222222111111222222333466678******** PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 +  qaI+e v+g+++vH +Df+i  G+Q   L+qaLa +R+ +   l+iT++g+   ++kee+eetg+rL++fA++l++pf+f ++ +++++dl+ e+ 
  PHT44542.1 656 AGIQAIVENVKGATKVHLVDFNIRSGIQCTGLMQALAeQRDCPIELLKITAIGH---QEKEEIEETGKRLQSFANSLNLPFSFAMVFMSDMKDLTAESV 751
                 *************************************55667888*********...57**************************************** PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                 +vk++E +aV +   l ++     + +++ d++++++++l+P vvvv+e ea+hns+sFl+rf+ea+ +ys+lfd++e  + r++  r+ +E + +g+ 
  PHT44542.1 752 NVKEDEIVAVYCYTVLRTMI----CRQDNLDNTMRVIRGLRPAVVVVCEIEANHNSPSFLNRFVEAIFFYSVLFDCFEDCMDRDNMVRKRIEVFHIGEG 846
                 ******************99....55555777******************************************************************* PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 i+n+va+egaer+ r+ +l  Wr+ + ++G+ ++++se+   qakl+l++++ +    v++  ++l+ gWk+ p+ svS W+
  PHT44542.1 847 IRNMVAAEGAERFTRNVKLDVWRAYFARFGMVEMEVSESSRYQAKLILKQFShGSSCIVQNGGKALLVGWKGTPIKSVSIWK 928
                 ****************************************************666677777788888**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    
MDSSSELYQQ EEKVISVCEY AANMLRESFQ CLTIILLSLL LPLTFIVLAR LSVARYLIAT  60
SAYTVPDTLL VRLYIYVNPT LLHLLVPFVS ISALSQCLTG RTLSDHMMAR PRVCASWFLL  120
FAFQICACVG IEGSIAVGVD GSGFGRERLW LVTRSLFFLG LHETTLFWSK KVVKPVVDDT  180
VFGAEAEDRY VEKVAMVLSF GLLWWCKLRD EVESLVVVAE VKRDLIGSVG WWLYYVTVAL  240
GMVKVVKALV WLNFVLFCGN VVDSDLSCAD SSLLMPHSCR ILQKYTSFSE SDTYSLTFLK  300
SPNNMDSDNA GCCTRNDDKR TVFHLDSLLV PGMDTKSPQL QSFKLSPRPA VKHRSPKAEH  360
FTSPGVQIMD SHEHLQECGR NELINNSFVD PWYELDSEDL ESLYAVFDDK HHKNTSDKQV  420
ELLEDQRQNI SDHWTQIDDS SNMVLQVTPE ASNGIQPQVP RLGGFHDEKT NSISLASLEL  480
LNNCGRLFKK SSEENLSNVC RNEARVSNIR KLSTEEILRI AGERYIQYST HRVDGLSMFI  540
HPYASSLTGL SIEQTKDMEL VHLLLAAAEE VDQQQFHLAS QSIARCLWKA SATGNPIQRL  600
CFYFGEALQE RIDHKIGRSP SFERKLRFLS TLALGTTPEV LTCHTEIPFS QVMQFAGIQA  660
IVENVKGATK VHLVDFNIRS GIQCTGLMQA LAEQRDCPIE LLKITAIGHQ EKEEIEETGK  720
RLQSFANSLN LPFSFAMVFM SDMKDLTAES VNVKEDEIVA VYCYTVLRTM ICRQDNLDNT  780
MRVIRGLRPA VVVVCEIEAN HNSPSFLNRF VEAIFFYSVL FDCFEDCMDR DNMVRKRIEV  840
FHIGEGIRNM VAAEGAERFT RNVKLDVWRA YFARFGMVEM EVSESSRYQA KLILKQFSHG  900
SSCIVQNGGK ALLVGWKGTP IKSVSIWKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-45GRAS family protein