PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT44652.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 252aa MW: 27587.6 Da PI: 7.7485

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT44652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.2	1.8e-40	65	164	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkCa++C+++ yf ++p+kfa+vhk+FGasnv+kll ++ e++r da++slvyeA++r+rdPvyG++g i++l+qq+++l+ael+++++ PHT44652.1 65 PCAACKLLRRKCAEECPFSLYFSPHEPQKFAVVHKVFGASNVSKLLMEVAENQRADAANSLVYEANVRLRDPVYGCMGAISSLNQQVQTLQAELNATRA 163 7**********************************************************************************************9998 PP DUF260 100 e 100 e PHT44652.1 164 E 164 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MPSASSGHFY SLDTPWERLL DEIVGKKLKI ENIDASSKLL HIQQIMGKRH HILEPSCTKL 60 NTIIPCAACK LLRRKCAEEC PFSLYFSPHE PQKFAVVHKV FGASNVSKLL MEVAENQRAD 120 AANSLVYEAN VRLRDPVYGC MGAISSLNQQ VQTLQAELNA TRAEILRYKY REATNSLVNI 180 AYTGVGAAVT LAELPQAPST PTHPPRPQPP QESVGVVVPC CSSPSLGPPL YPTLSSGDNF 240 SAIPNSNIPY FD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	4e-70	LBD family protein