PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT44655.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20813.9 Da    PI: 9.1142
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT44655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.77.2e-091057248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklye 48
                ri + ++++v + kR + + KKA+ L +LCd+e+ +  f + +++++ 
  PHT44655.1 10 RIVDPRKKKVLLDKRFASLCKKAKDLTILCDIEIGMFFFTPgDQNIFA 57
                778889999*************************99888763445555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MTKMGVRPSR IVDPRKKKVL LDKRFASLCK KAKDLTILCD IEIGMFFFTP GDQNIFAWPS  60
LTQATDRMKN YLASSDKQRQ IKMVRHEDFL QSILNAKEGK INQLEQMVDK KEMEYNFNQL  120
VEARRRFDEL EVREIRALIN LFAVKRTQLD ERAKQLNENE IDSNDYNNRE ENDGHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-13M-type_MADS family protein