PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT44889.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-X1

Protein Properties

Length: 856aa MW: 95241.8 Da PI: 8.443

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT44889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	23.4	1.3e-07	227	244	3	20
zf-NF-X1 3 kHkCqklCHeGpCppCpq 20 H+C+++CHeG+CppC++ PHT44889.1 227 THRCNEICHEGDCPPCKA 244 5***************95 PP
2	zf-NF-X1	20.4	1.1e-06	278	297	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC+k CHeG+C+ Cp+ PHT44889.1 278 CGRHKCEKGCHEGDCGDCPL 297 ******************95 PP
3	zf-NF-X1	18.1	5.9e-06	385	404	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ PHT44889.1 385 CGRHACKRRCCDGDCPPCSE 404 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence
MTSTVAPTLS NSDSDSSHCH HYSDLSSTIF KSYLELSGEQ QNEKHDLIKI QAFLTSSRSG 60 ALSCLICLER IRLSDPTWSC SSLCFAVFHL HCIQSWAVQS SNLAAARAAT RAATPNESSL 120 LWHCPKCRIE YSKSQIPKTY YCFCGKLPDP PHDPWVLPHS CGEICGRPLK YNCGHHCLLL 180 CHPGPCPSCP KLVKSNCFCG ALEDVKRCGF KNFSCNGICK NLLDCNTHRC NEICHEGDCP 240 PCKAKGMFKC QCGKVEMKRE CFDRVFRCEN PCDKLLGCGR HKCEKGCHEG DCGDCPLQGK 300 RTCPCGKRVY EGIACDAAVL VCGATCGKML SCGFHRCPER CHRGPCIETC RVIVTKSCRC 360 GSFMKLVPCY QDMTCQRKCQ KMRDCGRHAC KRRCCDGDCP PCSEMCDRKL RCRSHKCPAP 420 CHRGSCAPCP VMVPISCLCG ETHFEVPCGA EAEQKPPKCR KSCRVGRLCR HASNCKSHRC 480 HYGACPPCRL LCDEGYPCGH KCELRCHGPT PPPLPEFTLK PKKRRLNNQI EPTPGSSCPP 540 CPQLVWRSCL GNHVGAERMM VCSDKAIFSC DNLCGNLLAC GNHNCTKVCH TLVTSTSKSD 600 SSRRAETCEK CTLPCQQEQE PACPHPCPLP CHPGACPPCK ALIKRSCHCG SMVHVFECIY 660 YNSLSAKEQL TVRSCGGPCH RRLRNCTHLC PETCHPGECP SPDQCSKKVT VRCGCRTLKK 720 ELLCKEVQIG NRSSGTDAKD VPGNQYGLGL LPCNSDCRSK VKASETQLQH RKSKAPEEKE 780 TKDNATKRRR RRGRVLEDKK TSTLQRIVAG IRRFLLFVII MIALIASVYL GYKGLLWLSE 840 RMNEAEIQRQ RRYTRT

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence

MTSTVAPTLS NSDSDSSHCH HYSDLSSTIF KSYLELSGEQ QNEKHDLIKI QAFLTSSRSG  60
ALSCLICLER IRLSDPTWSC SSLCFAVFHL HCIQSWAVQS SNLAAARAAT RAATPNESSL  120
LWHCPKCRIE YSKSQIPKTY YCFCGKLPDP PHDPWVLPHS CGEICGRPLK YNCGHHCLLL  180
CHPGPCPSCP KLVKSNCFCG ALEDVKRCGF KNFSCNGICK NLLDCNTHRC NEICHEGDCP  240
PCKAKGMFKC QCGKVEMKRE CFDRVFRCEN PCDKLLGCGR HKCEKGCHEG DCGDCPLQGK  300
RTCPCGKRVY EGIACDAAVL VCGATCGKML SCGFHRCPER CHRGPCIETC RVIVTKSCRC  360
GSFMKLVPCY QDMTCQRKCQ KMRDCGRHAC KRRCCDGDCP PCSEMCDRKL RCRSHKCPAP  420
CHRGSCAPCP VMVPISCLCG ETHFEVPCGA EAEQKPPKCR KSCRVGRLCR HASNCKSHRC  480
HYGACPPCRL LCDEGYPCGH KCELRCHGPT PPPLPEFTLK PKKRRLNNQI EPTPGSSCPP  540
CPQLVWRSCL GNHVGAERMM VCSDKAIFSC DNLCGNLLAC GNHNCTKVCH TLVTSTSKSD  600
SSRRAETCEK CTLPCQQEQE PACPHPCPLP CHPGACPPCK ALIKRSCHCG SMVHVFECIY  660
YNSLSAKEQL TVRSCGGPCH RRLRNCTHLC PETCHPGECP SPDQCSKKVT VRCGCRTLKK  720
ELLCKEVQIG NRSSGTDAKD VPGNQYGLGL LPCNSDCRSK VKASETQLQH RKSKAPEEKE  780
TKDNATKRRR RRGRVLEDKK TSTLQRIVAG IRRFLLFVII MIALIASVYL GYKGLLWLSE  840
RMNEAEIQRQ RRYTRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	519	525	LKPKKRR
2	787	792	KRRRRR
3	841	852	RMNEAEIQRQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein