PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45061.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25660.6 Da PI: 4.9273

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	5.7e-20	20	70	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq+++Le++F+++ ++ +++ eLA+ lgL++rqV +WFqNrRa++k PHT45061.1 20 RFSDEQVKALESMFKQKTKLEPSKKLELARDLGLQTRQVAIWFQNRRARWK 70 69************************************************9 PP
2	HD-ZIP_I/II	118.9	2.8e-38	19	108	4	93
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+s+eqvk+LE++F++++kLep++K elar+Lglq+rqva+WFqnrRAR+ktkqlE++y+ Lk+++d+l+ + ++L+ke+e+L ++lke PHT45061.1 19 KRFSDEQVKALESMFKQKTKLEPSKKLELARDLGLQTRQVAIWFQNRRARWKTKQLEHEYRLLKAEFDNLAVQFDSLKKEKESLLKQLKE 108 8**************************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MEAEDGLAEC SKKKCEDGKR FSDEQVKALE SMFKQKTKLE PSKKLELARD LGLQTRQVAI 60 WFQNRRARWK TKQLEHEYRL LKAEFDNLAV QFDSLKKEKE SLLKQLKELN DHLENNHADC 120 SRRQDSIGSE VYTSSENVGT ELDLKDNIPG CLNESLDHER IKGADSDREG TLIEYFRCKE 180 EAEFWNMEEL GESSLGSPGH WYAVGQGGSF EPSCANSKWW EF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	73	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	1e-32	HD-ZIP family protein