PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45356.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 525aa MW: 56847.3 Da PI: 8.1723

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.8	2.1e-09	133	155	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+++++ G Ck+G++CkF H+ PHT45356.1 133 PICCHYSQVGVCKFGPSCKFDHP 155 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MLLRLSALPR FIWPLACLEG TFSFASRYSR TIHLSSTAFS FCSFNRTTWN DCWQLASCKA 60 YSAFRFLSPS TYRPTHFPPE MVSMLDWIPC LASASPVASQ STQSAGGAGP VYGPMIVCNY 120 LLQHLPTRDR GAPICCHYSQ VGVCKFGPSC KFDHPLGISY SPSASSLTDM PVALYPGGSS 180 VGTLAPSSSS SDLRPELVSG SSKEVFSTQA SSMRAASGPV GSMFSKGDSV FHSGVCHSYT 240 SSSCSRSTGH DVVRPNLLSG SYLLGSYGPM LFSPEMVSMP DWTPCPVRIL VATDRNRKPR 300 TGFTGSRTLP EPPYRFMSPE PEYRNIYPVR TGPTLDELVS GSSKEVFSTL VSSMSTANGP 360 VGSMFSKGDP VSHSGVQQSC TSSSVSWSTG HLDNSIRLGW ILSNKQCCNS SKPSLVLCAR 420 TCARQSFADM TDVVSPSKSP FVVKTSQSER SDSVPTINIV DSSHVFYIHH SDYPGMNLVS 480 TIFDGRIYDG WRRTIIIALS AKNKLEFVDG SLAYPNADTD FNELG

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MLLRLSALPR FIWPLACLEG TFSFASRYSR TIHLSSTAFS FCSFNRTTWN DCWQLASCKA  60
YSAFRFLSPS TYRPTHFPPE MVSMLDWIPC LASASPVASQ STQSAGGAGP VYGPMIVCNY  120
LLQHLPTRDR GAPICCHYSQ VGVCKFGPSC KFDHPLGISY SPSASSLTDM PVALYPGGSS  180
VGTLAPSSSS SDLRPELVSG SSKEVFSTQA SSMRAASGPV GSMFSKGDSV FHSGVCHSYT  240
SSSCSRSTGH DVVRPNLLSG SYLLGSYGPM LFSPEMVSMP DWTPCPVRIL VATDRNRKPR  300
TGFTGSRTLP EPPYRFMSPE PEYRNIYPVR TGPTLDELVS GSSKEVFSTL VSSMSTANGP  360
VGSMFSKGDP VSHSGVQQSC TSSSVSWSTG HLDNSIRLGW ILSNKQCCNS SKPSLVLCAR  420
TCARQSFADM TDVVSPSKSP FVVKTSQSER SDSVPTINIV DSSHVFYIHH SDYPGMNLVS  480
TIFDGRIYDG WRRTIIIALS AKNKLEFVDG SLAYPNADTD FNELG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	7e-14	C3H family protein