PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45433.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 136aa MW: 15902.2 Da PI: 9.84

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45433.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.9	1.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvt+skRrngi+KKA E+ vLCda+v++iif+++gk++ey+s PHT45433.1 9 KRIENSNNRQVTYSKRRNGIIKKAREITVLCDAKVSLIIFGTSGKMHEYCS 59 79***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence
MGRGKIEIKR IENSNNRQVT YSKRRNGIIK KAREITVLCD AKVSLIIFGT SGKMHEYCSP 60 STTMSDILDG YQKASGRRLW DAKHEHQKEM AAMGGNMRGI HEEAMYHQRE REDYEYQQMP 120 FALRVQPMQP NLHERM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-44	MIKC_MADS family protein