PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45473.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

YABBY

Protein Properties

Length: 215aa MW: 24146.4 Da PI: 7.9691

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	194	6.6e-60	11	170	5	165
YABBY 5 ssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + + +CyvqC++C+til+vsvP +s k+vtvrCGhCtslls+nl+kas +l + ++ + +l + + ++ee+++ n+++ + +s ++s PHT45473.1 11 DLQDTLCYVQCGYCTTILLVSVPCSSFCnKIVTVRCGHCTSLLSLNLTKASllpfHLFDSFNQTH-----QLPKPEVDKEETVDANKKSVDLESPVIAS 104 67899******************98637**************99844434444444322.....23333333444445555555555555555 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + +e++ e+v +v++PPekrqr+Psayn+fikeei+r+ka P+++h++afs+aaknWahfP PHT45473.1 105 SD-EEDKYENVLPLNQVNKPPEKRQRAPSAYNCFIKEEIKRLKALYPNMTHKQAFSTAAKNWAHFPS 170 44.667778888899*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MSALNNHMFH DLQDTLCYVQ CGYCTTILLV SVPCSSFCNK IVTVRCGHCT SLLSLNLTKA 60 SLLPFHLFDS FNQTHQLPKP EVDKEETVDA NKKSVDLESP VIASSDEEDK YENVLPLNQV 120 NKPPEKRQRA PSAYNCFIKE EIKRLKALYP NMTHKQAFST AAKNWAHFPS SQHRGSCSLG 180 DGKMAKVSVA RNSLVPRDRN GFLEREASST TPFHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	8e-50	YABBY family protein