PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45514.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 313aa MW: 35579.2 Da PI: 8.486

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	151	205	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k PHT45514.1 151 RKKLRLTKEQSAILEDSFKEHHTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 205 678899***********************************************98 PP
2	HD-ZIP_I/II	127.1	7.6e-41	151	239	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+++LE+sF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr + PHT45514.1 151 RKKLRLTKEQSAILEDSFKEHHTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCVENLTEDNRRLQKEVQELR-S 239 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MMMEKEDLGL SLSLSFPTEK RTTVINPMQQ RNLIPSTIIS PYATTSTFNL IHKSAPNWST 60 QPLFPDSSSD RNSETCRLVE TRSFLKGIDV NRMPAANGDA EEEAGVSSPN STISSLSGNK 120 RSEREANCEE NEMERASSRG ISDEEDGENC RKKLRLTKEQ SAILEDSFKE HHTLNPKQKL 180 ALAKRLGLRP RQVEVWFQNR RARTKLKQTE VDCEFLKRCV ENLTEDNRRL QKEVQELRSL 240 KLSPQFYMQM TPPTTLTMCP SCERVASGPT NTPVNVRVGP PHHHQPMPLN MWAPTTQGQY 300 GQMESYPTLA RQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	208	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	5e-99	HD-ZIP family protein